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Comparison of data obtained using NeuronMetrics and previous <t>SimplePCI-based</t> image-analysis method. (A) Portion of a cultured anti-HRP-stained neuron imaged with the SpotRT camera. Background is higher than in other images in this report which were acquired with a more sensitive camera. (B) Skeleton generated by NeuronMetrics provides a good representation of the neurites, although some noise is skeletonized (asterisks). The skeleton has been thickened to three-pixels-wide to improve visibility. (C–E) Quantitative morphometric data obtained using a set of neurons from a single experiment, all imaged with the SpotRT camera (n = 50). Comparison of semi-automated NeuronMetrics method with the SimplePCI-based method that required extensive manual editing. (C, D) Pairs of box-plot distributions, with the Mann-Whitney rank sum test showing no statistically significant differences between results obtained by the two methods. (C) Total neurite length (P = 0.12). (D) Branch number (P = 0.70). (E) The PI profiles obtained with the two methods were very similar. This is the typical skewed PI profile of 201Y-marked mushroom body GreekGamma neurons.
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Comparison of data obtained using NeuronMetrics and previous <t>SimplePCI-based</t> image-analysis method. (A) Portion of a cultured anti-HRP-stained neuron imaged with the SpotRT camera. Background is higher than in other images in this report which were acquired with a more sensitive camera. (B) Skeleton generated by NeuronMetrics provides a good representation of the neurites, although some noise is skeletonized (asterisks). The skeleton has been thickened to three-pixels-wide to improve visibility. (C–E) Quantitative morphometric data obtained using a set of neurons from a single experiment, all imaged with the SpotRT camera (n = 50). Comparison of semi-automated NeuronMetrics method with the SimplePCI-based method that required extensive manual editing. (C, D) Pairs of box-plot distributions, with the Mann-Whitney rank sum test showing no statistically significant differences between results obtained by the two methods. (C) Total neurite length (P = 0.12). (D) Branch number (P = 0.70). (E) The PI profiles obtained with the two methods were very similar. This is the typical skewed PI profile of 201Y-marked mushroom body GreekGamma neurons.
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Comparison of data obtained using NeuronMetrics and previous <t>SimplePCI-based</t> image-analysis method. (A) Portion of a cultured anti-HRP-stained neuron imaged with the SpotRT camera. Background is higher than in other images in this report which were acquired with a more sensitive camera. (B) Skeleton generated by NeuronMetrics provides a good representation of the neurites, although some noise is skeletonized (asterisks). The skeleton has been thickened to three-pixels-wide to improve visibility. (C–E) Quantitative morphometric data obtained using a set of neurons from a single experiment, all imaged with the SpotRT camera (n = 50). Comparison of semi-automated NeuronMetrics method with the SimplePCI-based method that required extensive manual editing. (C, D) Pairs of box-plot distributions, with the Mann-Whitney rank sum test showing no statistically significant differences between results obtained by the two methods. (C) Total neurite length (P = 0.12). (D) Branch number (P = 0.70). (E) The PI profiles obtained with the two methods were very similar. This is the typical skewed PI profile of 201Y-marked mushroom body GreekGamma neurons.
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Image Search Results


Comparison of data obtained using NeuronMetrics and previous SimplePCI-based image-analysis method. (A) Portion of a cultured anti-HRP-stained neuron imaged with the SpotRT camera. Background is higher than in other images in this report which were acquired with a more sensitive camera. (B) Skeleton generated by NeuronMetrics provides a good representation of the neurites, although some noise is skeletonized (asterisks). The skeleton has been thickened to three-pixels-wide to improve visibility. (C–E) Quantitative morphometric data obtained using a set of neurons from a single experiment, all imaged with the SpotRT camera (n = 50). Comparison of semi-automated NeuronMetrics method with the SimplePCI-based method that required extensive manual editing. (C, D) Pairs of box-plot distributions, with the Mann-Whitney rank sum test showing no statistically significant differences between results obtained by the two methods. (C) Total neurite length (P = 0.12). (D) Branch number (P = 0.70). (E) The PI profiles obtained with the two methods were very similar. This is the typical skewed PI profile of 201Y-marked mushroom body GreekGamma neurons.

Journal:

Article Title: NeuronMetrics: Software for Semi-Automated Processing of Cultured-Neuron Images

doi: 10.1016/j.brainres.2006.10.094

Figure Lengend Snippet: Comparison of data obtained using NeuronMetrics and previous SimplePCI-based image-analysis method. (A) Portion of a cultured anti-HRP-stained neuron imaged with the SpotRT camera. Background is higher than in other images in this report which were acquired with a more sensitive camera. (B) Skeleton generated by NeuronMetrics provides a good representation of the neurites, although some noise is skeletonized (asterisks). The skeleton has been thickened to three-pixels-wide to improve visibility. (C–E) Quantitative morphometric data obtained using a set of neurons from a single experiment, all imaged with the SpotRT camera (n = 50). Comparison of semi-automated NeuronMetrics method with the SimplePCI-based method that required extensive manual editing. (C, D) Pairs of box-plot distributions, with the Mann-Whitney rank sum test showing no statistically significant differences between results obtained by the two methods. (C) Total neurite length (P = 0.12). (D) Branch number (P = 0.70). (E) The PI profiles obtained with the two methods were very similar. This is the typical skewed PI profile of 201Y-marked mushroom body GreekGamma neurons.

Article Snippet: Our previous method for assessing neuronal morphology relied on computer-assisted analysis using commercial software (SimplePCI, Compix Inc.) to skeletonize 2D neuron images, with primary and secondary parameters obtained from the skeletons.

Techniques: Comparison, Cell Culture, Staining, Generated, MANN-WHITNEY